Highlights & Publications 2017

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  1. Wallen JR, Zhang H, Weis C, Cui W, Foster BM, Ho CMW, Hammel M, Tainer JA, Gross ML, Ellenberger T. “Hybrid Methods Reveal Multiple Flexibly Linked DNA Polymerases within the Bacteriophage T7 Replisome.” Structure (London, England : 1993) 2017 Jan 03 ;25(1):157-166 link
  2. Wallace BD, Berman Z, Mueller GA, Lin Y, Chang T, Andres SN, Wojtaszek JL, DeRose EF, Appel CD, London RE, Yan S, Williams RS. “APE2 Zf-GRF facilitates 3′-5′ resection of DNA damage following oxidative stress.” Proceedings of the National Academy of Sciences of the United States of America 2017 Jan 10 ;114(2):304-309 link
  3. Cantara WA, Olson ED, Musier-Forsyth K. “Analysis of RNA structure using small-angle X-ray scattering.” Methods (San Diego, Calif.) 2017 Jan 15 ;113:46-55 link
  4. Michael AK, Fribourgh JL, Chelliah Y, Sandate CR, Hura GL, Schneidman-Duhovny D, Tripathi SM, Takahashi JS, Partch CL. “Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1.” Proceedings of the National Academy of Sciences of the United States of America 2017 Feb 14 ;114(7):1560-1565 link
  5. Susa AC, Xia Z, Tang HYH, Tainer JA, Williams ER. “Charging of Proteins in Native Mass Spectrometry.” Journal of the American Society for Mass Spectrometry 2017 Feb ;28(2):332-340 link
  6. Stamogiannos A, Maben Z, Papakyriakou A, Mpakali A, Kokkala P, Georgiadis D, Stern LJ, Stratikos E. “Critical Role of Interdomain Interactions in the Conformational Change and Catalytic Mechanism of Endoplasmic Reticulum Aminopeptidase 1.” Biochemistry 2017 Mar 14 ;56(10):1546-1558 link
  7. Prakash A, Moharana K, Wallace SS, Doublié S. “Destabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase.” Nucleic acids research 2017 Mar 17 ;45(5):2897-2909 link
  8. Zhang J, Gonzalez LE, Hall TMT. “Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate.” Nucleic acids research 2017 Mar 17 ;45(5):2829-2837 link
  9. Cook JD, Sultana A, Lee JE. “Structure of the infectious salmon anemia virus receptor complex illustrates a unique binding strategy for attachment.” Proceedings of the National Academy of Sciences of the United States of America 2017 Apr 04 ;114(14):E2929-E2936 link
  10. Fallas JA, Ueda G, Sheffler W, Nguyen V, McNamara DE, Sankaran B, Pereira JH, Parmeggiani F, Brunette TJ, Cascio D, Yeates TR, Zwart P, Baker D. “Computational design of self-assembling cyclic protein homo-oligomers.” Nature chemistry 2017 Apr ;9(4):353-360 link
  11. Lo YH, Romes EM, Pillon MC, Sobhany M, Stanley RE. “Structural Analysis Reveals Features of Ribosome Assembly Factor Nsa1/WDR74 Important for Localization and Interaction with Rix7/NVL2.” Structure (London, England : 1993) 2017 May 02 ;25(5):762-772.e4 link
  12. Hu Q, Botuyan MV, Cui G, Zhao D, Mer G. “Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18.” Molecular cell 2017 May 18 ;66(4):473-487.e9 link
  13. Aceytuno RD, Piett CG, Havali-Shahriari Z, Edwards RA, Rey M, Ye R, Javed F, Fang S, Mani R, Weinfeld M, Hammel M, Tainer JA, Schriemer DC, Lees-Miller SP, Glover JNM. “Structural and functional characterization of the PNKP-XRCC4-LigIV DNA repair complex.” Nucleic acids research 2017 Jun 02 ;45(10):6238-6251 link
  14. Shi Y, Hellinga HW, Beese LS. “Interplay of catalysis, fidelity, threading, and processivity in the exo- and endonucleolytic reactions of human exonuclease I.” Proceedings of the National Academy of Sciences of the United States of America 2017 Jun 06 ;114(23):6010-6015 link
  15. AhYoung AP, Lu B, Cascio D, Egea PF. “Crystal structure of Mdm12 and combinatorial reconstitution of Mdm12/Mmm1 ERMES complexes for structural studies.” Biochemical and biophysical research communications 2017 Jun 17 ;488(1):129-135 link
  16. Galeano BK, Ranatunga W, Gakh O, Smith DY, Thompson JR, Isaya G. “Zinc and the iron donor frataxin regulate oligomerization of the scaffold protein to form new Fe-S cluster assembly centers.” Metallomics : integrated biometal science 2017 Jun 21 ;9(6):773-801 link
  17. Tsutakawa SE, Thompson MJ, Arvai AS, Neil AJ, Shaw SJ, Algasaier SI, Kim JC, Finger LD, Jardine E, Gotham VJB, Sarker AH, Her MZ, Rashid F, Hamdan SM, Mirkin SM, Grasby JA, Tainer JA. “Phosphate steering by Flap Endonuclease 1 promotes 5′-flap specificity and incision to prevent genome instability.” Nature communications 2017 Jun 27 ;8:15855 link
  18. Leksa NC, Chiu PL, Bou-Assaf GM, Quan C, Liu Z, Goodman AB, Chambers MG, Tsutakawa SE, Hammel M, Peters RT, Walz T, Kulman JD. “The structural basis for the functional comparability of factor VIII and the long-acting variant recombinant factor VIII Fc fusion protein.” Journal of thrombosis and haemostasis : JTH 2017 Jun ;15(6):1167-1179 link
  19. Pillon MC, Sobhany M, Borgnia MJ, Williams JG, Stanley RE. “Grc3 programs the essential endoribonuclease Las1 for specific RNA cleavage.” Proceedings of the National Academy of Sciences of the United States of America 2017 Jul 11 ;114(28):E5530-E5538 link
  20. Starbird CA, Maklashina E, Sharma P, Qualls-Histed S, Cecchini G, Iverson TM. “Structural and biochemical analyses reveal insights into covalent flavinylation of the Escherichia coli Complex II homolog quinol:fumarate reductase.” The Journal of biological chemistry 2017 Aug 04 ;292(31):12921-12933 link
  21. Trewhella J, Duff AP, Durand D, Gabel F, Guss JM, Hendrickson WA, Hura GL, Jacques DA, Kirby NM, Kwan AH, Pérez J, Pollack L, Ryan TM, Sali A, Schneidman-Duhovny D, Schwede T, Svergun DI, Sugiyama M, Tainer JA, Vachette P, Westbrook J, Whitten AE. “2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update.” Acta crystallographica. Section D, Structural biology 2017 Sep 01 ;73(Pt 9):710-728 link
  22. Halpin JC, Street TO. “Hsp90 Sensitivity to ADP Reveals Hidden Regulation Mechanisms.” Journal of molecular biology 2017 Sep 15 ;429(19):2918-2930 link
  23. Schellenberg MJ, Lieberman JA, Herrero-Ruiz A, Butler LR, Williams JG, Muñoz-Cabello AM, Mueller GA, London RE, Cortés-Ledesma F, Williams RS. “ZATT (ZNF451)-mediated resolution of topoisomerase 2 DNA-protein cross-links.” Science (New York, N.Y.) 2017 Sep 29 ;357(6358):1412-1416 link
  24. Korasick DA, Singh H, Pemberton TA, Luo M, Dhatwalia R, Tanner JJ. “Biophysical investigation of type A PutAs reveals a conserved core oligomeric structure.” The FEBS journal 2017 Sep ;284(18):3029-3049 link
  25. Sun L, Huang Y, Edwards RA, Yang S, Blackford AN, Niedzwiedz W, Glover JNM. “Structural Insight into BLM Recognition by TopBP1.” Structure (London, England : 1993) 2017 Oct 03 ;25(10):1582-1588.e3 link
  26. Spencer RK, Hochbaum AI. “The Phe-Ile Zipper: A Specific Interaction Motif Drives Antiparallel Coiled-Coil Hexamer Formation.” Biochemistry 2017 Oct 10 ;56(40):5300-5308 link
  27. Xu Z, Gakhar L, Bain FE, Spies M, Fuentes EJ. “The Tiam1 guanine nucleotide exchange factor is auto-inhibited by its pleckstrin homology coiled-coil extension domain.” The Journal of biological chemistry 2017 Oct 27 ;292(43):17777-17793 link
  28. Korasick DA, Wyatt JW, Luo M, Laciak AR, Ruddraraju K, Gates KS, Henzl MT, Tanner JJ. “Importance of the C-Terminus of Aldehyde Dehydrogenase 7A1 for Oligomerization and Catalytic Activity.” Biochemistry 2017 Nov 07 ;56(44):5910-5919 link
  29. Hura GL, Tainer JA. “Coiled coils unspring protein origami.” Nature biotechnology 2017 Nov 09 ;35(11):1044-1045 link
  30. Lin YR, Koga N, Vorobiev SM, Baker D. “Cyclic oligomer design with de novo αβ-proteins.” Protein science : a publication of the Protein Society 2017 Nov ;26(11):2187-2194 link
  31. Lee S, Wang C, Liu H, Xiong J, Jiji R, Hong X, Yan X, Chen Z, Hammel M, Wang Y, Dai S, Wang J, Jiang C, Zhang G. “Hydrogen bonds are a primary driving force for de novo protein folding.” Acta crystallographica. Section D, Structural biology 2017 Dec 01 ;73(Pt 12):955-969 link
  32. Melchior JT, Walker RG, Cooke AL, Morris J, Castleberry M, Thompson TB, Jones MK, Song HD, Rye KA, Oda MN, Sorci-Thomas MG, Thomas MJ, Heinecke JW, Mei X, Atkinson D, Segrest JP, Lund-Katz S, Phillips MC, Davidson WS. “A consensus model of human apolipoprotein A-I in its monomeric and lipid-free state.” Nature structural & molecular biology 2017 Dec ;24(12):1093-1099 link
  33. Tang HYH, Tainer JA, Hura GL. “High Resolution Distance Distributions Determined by X-Ray and Neutron Scattering.” Advances in experimental medicine and biology 2017 ;1009:167-181 link
  34. Dai Y, Kizjakina K, Campbell AC, Korasick DA, Tanner JJ, Sobrado P. “Flavin-N5 Covalent Intermediate in a Nonredox Dehalogenation Reaction Catalyzed by an Atypical Flavoenzyme.” Chembiochem : a European journal of chemical biology 2018 Jan 04 ;19(1):53-57 link

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