Highlights & Publications 2017

  1. Lee S, Wang C, Liu H, Xiong J, Jiji R, Hong X, Yan X, Chen Z, Hammel M, Wang Y, Dai S, Wang J, Jiang C, Zhang G. “Hydrogen bonds are a primary driving force for de novo protein folding.” Acta Crystallogr D Struct Biol 2017 Dec 01 ;73(Pt 12):955-969 link
  2. Tang HYH, Tainer JA, Hura GL. “High Resolution Distance Distributions Determined by X-Ray and Neutron Scattering.” Adv. Exp. Med. Biol. 2017 ;1009:167-181 link
  3. Melchior JT, Walker RG, Cooke AL, Morris J, Castleberry M, Thompson TB, Jones MK, Song HD, Rye KA, Oda MN, Sorci-Thomas MG, Thomas MJ, Heinecke JW, Mei X, Atkinson D, Segrest JP, Lund-Katz S, Phillips MC, Davidson WS. “A consensus model of human apolipoprotein A-I in its monomeric and lipid-free state.” Nat. Struct. Mol. Biol. 2017 Dec ;24(12):1093-1099 link
  4. Hura GL, Tainer JA. “Coiled coils unspring protein origami.” Nat. Biotechnol. 2017 Nov 09 ;35(11):1044-1045 link
  5. Dai Y, Kizjakina K, Campbell AC, Korasick DA, Tanner JJ, Sobrado P. “Flavin-N5 Covalent Intermediate in the Non-redox Dehalogenation Reaction Catalyzed by an Atypical Flavoenzyme.” Chembiochem 2017 Nov 08 link
  6. Korasick DA, Wyatt JW, Luo M, Laciak AR, Ruddraraju K, Gates KS, Henzl MT, Tanner JJ. “Importance of the C-Terminus of Aldehyde Dehydrogenase 7A1 for Oligomerization and Catalytic Activity.” Biochemistry 2017 Nov 07 ;56(44)link
  7. Lin YR, Koga N, Vorobiev SM, Baker D. “Fixed and Flexible Backbone Cyclic Oligomer Design Using De Novo αβ Proteins.” Protein Sci. 2017 Nov;26(11):2187–94.link
  8. Spencer RK, Hochbaum AI. “The Phe-Ile Zipper: A Specific Interaction Motif Drives Antiparallel Coiled-Coil Hexamer Formation.” Biochemistry 2017 Oct 10 ;56(40)link
  9. Xu Z, Gakhar L, Bain FE, Spies M, Fuentes EJ. “The Tiam1 guanine nucleotide exchange factor is auto-inhibited by its pleckstrin homology coiled-coil extension domain.” J. Biol. Chem. 2017 Oct 27 ;292(43)link
  10. Sun L, Huang Y, Edwards RA, Yang S, Blackford AN, Niedzwiedz W, Glover JNM. “Structural Insight into BLM Recognition by TopBP1.” Structure 2017 10 03 ;25(10):1582-1588.e3 link
  11. Trewhella J, Duff AP, Durand D, Gabel F, Guss JM, Hendrickson WA, Hura GL, Jacques DA, Kirby NM, Kwan AH, Pérez J, Pollack L, Ryan TM, Sali A, Schneidman-Duhovny D, Schwede T, Svergun DI, Sugiyama M, Tainer JA, Vachette P, Westbrook J, Whitten AE. “2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update.” Acta Crystallogr D Struct Biol 2017 Sep 01 ;73(Pt 9)link
  12. Schellenberg MJ, Lieberman JA, Herrero-Ruiz A, Butler LR, Williams JG, Muñoz-Cabello AM, Mueller GA, London RE, Cortés-Ledesma F, Williams RS. “ZATT (ZNF451)-mediated resolution of topoisomerase 2 DNA-protein cross-links.” Science 2017 09 29 ;357(6358)link
  13. Korasick DA, Singh H, Pemberton TA, Luo M, Dhatwalia R, Tanner JJ. “Biophysical investigation of type A PutAs reveals a conserved core oligomeric structure.” FEBS J. 2017 Sep ;284(18)link
  14. Halpin JC, Street TO. “Hsp90 Sensitivity to ADP Reveals Hidden Regulation Mechanisms.” J. Mol. Biol. 2017 Sep 15 ;429(19)link
  15. Starbird CA, Maklashina E, Sharma P, Qualls-Histed S, Cecchini G, Iverson TM. “Structural and biochemical analyses reveal insights into covalent flavinylation of the Escherichia coli Complex II homolog quinol:fumarate reductase.” J. Biol. Chem. 2017 Aug 04 ;292(31)link
  16. Pillon MC, Sobhany M, Borgnia MJ, Williams JG, Stanley RE. “Grc3 programs the essential endoribonuclease Las1 for specific RNA cleavage.” Proc. Natl. Acad. Sci. U.S.A. 2017 Jul 11 ;114(28)link
  17. Leksa NC, Chiu PL, Bou-Assaf GM, Quan C, Liu Z, Goodman AB, Chambers MG, Tsutakawa SE, Hammel M, Peters RT, Walz T, Kulman JD. “The structural basis for the functional comparability of factor VIII and the long-acting variant recombinant factor VIII Fc fusion protein.” J. Thromb. Haemost. 2017 Jun ;15(6)link
  18. Shi Y, Hellinga HW, Beese LS. “Interplay of catalysis, fidelity, threading, and processivity in the exo- and endonucleolytic reactions of human exonuclease I.” Proc. Natl. Acad. Sci. U.S.A. 2017 Jun 06 ;114(23)link
  19. AhYoung AP, Lu B, Cascio D, Egea PF. “Crystal structure of Mdm12 and combinatorial reconstitution of Mdm12/Mmm1 ERMES complexes for structural studies.” Biochem. Biophys. Res. Commun. 2017 06 17 ;488(1)link
  20. Galeano BK, Ranatunga W, Gakh O, Smith DY, Thompson JR, Isaya G. “Zinc and the iron donor frataxin regulate oligomerization of the scaffold protein to form new Fe-S cluster assembly centers.” Metallomics 2017 Jun 21 ;9(6)link
  21. Tsutakawa SE, Thompson MJ, Arvai AS, Neil AJ, Shaw SJ, Algasaier SI, Kim JC, Finger LD, Jardine E, Gotham VJB, Sarker AH, Her MZ, Rashid F, Hamdan SM, Mirkin SM, Grasby JA, Tainer JA. “Phosphate steering by Flap Endonuclease 1 promotes 5′-flap specificity and incision to prevent genome instability.” Nat Commun 2017 Jun 27 ;8link
  22. Aceytuno RD, Piett CG, Havali-Shahriari Z, Edwards RA, Rey M, Ye R, Javed F, Fang S, Mani R, Weinfeld M, Hammel M, Tainer JA, Schriemer DC, Lees-Miller SP, Glover JNM. “Structural and functional characterization of the PNKP-XRCC4-LigIV DNA repair complex.” Nucleic Acids Res. 2017 Jun 02 ;45(10):6238-6251 link
  23. Hu Q, Botuyan MV, Cui G, Zhao D, Mer G. “Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18.” Mol. Cell 2017 May 18 ;66(4)link
  24. Lo YH, Romes EM, Pillon MC, Sobhany M, Stanley RE. “Structural Analysis Reveals Features of Ribosome Assembly Factor Nsa1/WDR74 Important for Localization and Interaction with Rix7/NVL2.” Structure 2017 May 02 ;25(5)link
  25. Fallas JA, Ueda G, Sheffler W, Nguyen V, McNamara DE, Sankaran B, Pereira JH, Parmeggiani F, Brunette TJ, Cascio D, Yeates TR, Zwart P, Baker D. “Computational design of self-assembling cyclic protein homo-oligomers.” Nat Chem 2017 Apr ;9(4)link
  26. Cook JD, Sultana A, Lee JE. “Structure of the infectious salmon anemia virus receptor complex illustrates a unique binding strategy for attachment.” Proc. Natl. Acad. Sci. U.S.A. 2017 Apr 04 ;114(14)link
  27. Prakash A, Moharana K, Wallace SS, Doublié S. “Destabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase.” Nucleic Acids Res. 2017 Mar 17 ;45(5)link
  28. Stamogiannos A, Maben Z, Papakyriakou A, Mpakali A, Kokkala P, Georgiadis D, Stern LJ, Stratikos E. “Critical Role of Interdomain Interactions in the Conformational Change and Catalytic Mechanism of Endoplasmic Reticulum Aminopeptidase 1.” Biochemistry 2017 Mar 14 ;56(10)link
  29. Zhang J, Gonzalez LE, Hall TMT. “Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate.” Nucleic Acids Res. 2017 Mar 17 ;45(5)link
  30. Susa AC, Xia Z, Tang HY, Tainer JA, Williams ER. “Charging of Proteins in Native Mass Spectrometry.” J. Am. Soc. Mass Spectrom. 2017 Feb ;28(2)link
  31. Michael AK, Fribourgh JL, Chelliah Y, Sandate CR, Hura GL, Schneidman-Duhovny D, Tripathi SM, Takahashi JS, Partch CL. “Formation of a repressive complex in the mammalian circadian clock is mediated by the secondary pocket of CRY1.” Proc. Natl. Acad. Sci. U.S.A. 2017 Feb 14 ;114(7)link
  32. Wallace BD, Berman Z, Mueller GA, Lin Y, Chang T, Andres SN, Wojtaszek JL, DeRose EF, Appel CD, London RE, Yan S, Williams RS. “APE2 Zf-GRF facilitates 3′-5′ resection of DNA damage following oxidative stress.” Proc. Natl. Acad. Sci. U.S.A. 2017 Jan 10 ;114(2)link
  33. Wallen JR, Zhang H, Weis C, Cui W, Foster BM, Ho CM, Hammel M, Tainer JA, Gross ML, Ellenberger T. “Hybrid Methods Reveal Multiple Flexibly Linked DNA Polymerases within the Bacteriophage T7 Replisome.” Structure 2017 Jan 03 ;25(1)link
  34. Cantara WA, Olson ED, Musier-Forsyth K. “Analysis of RNA structure using small-angle X-ray scattering.” Methods 2017 Jan 15 ;113link

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