We are pleased to announced the SIBYLS 12th annual BioSAXS workshop to be held during the 2021 ALS User Meeting.

DATES : August 12th and 13th

LOCATION : Lawrence Berkeley Lab, Berkeley, CA (but you can join from anywhere in the world via ZOOM)

This two-day BioSAXS workshop is designed for current and future SIBYLS SAXS users. The latest advances in SAXS studies on biological systems will be discussed with particular focus on advances in our mail-in SAXS program and on advances in synchrotron scattering techniques, modeling of dynamic and flexible structures, integrating high-resolution models in the SAXS modeling, bioSAXS with membrane protein, and integrating bioSAXS analysis within cryo-EM imaging and crystallography.

On the first day, SIBYLS Lab’s SAXS Beamline Scientists will introduce the future of high throughput and size exclusion coupled SAXS (HT-SAXS and SEC-SAXS). Additionally, we have an exciting group of experienced scientists from around the world who will present talks. Dr. Robert Rambo is the principal beamline scientist at beamline B21 at the Diamond Light Source in Oxford, England. Dr. Rambo is the author of ScÅtter and will expound on using this tool for SAXS analysis. Dr. Nozomi Ando, a principal investigator at Cornell University best known for using X-ray scattering approaches to embrace conformational disorder, will speak about EFA and SVD applications for SAXS.

Other speakers include Dr. Soumya Remesh from the Wells Lab at UCSF. Dr. Remesh will speak on SAXS and SARS-Cov-2 protein. Dr. Aleem Syed from MD Anderson Cancer Center will speak on SAXS and DNA-proteins. Dr. Gundeep Kaur, also from MD Anderson Cancer Center, will give a talk on DNA-protein complexes.

On the second day, we will provide participants with software tutorial sessions for biological SAXS and provide an opportunity for participants to present and discuss their projects with the SIBYLS staff. Interested users will present their case studies for workshop analysis. This will provide for a flux of ideas among workshop participants, and inspire new perspectives for future data analysis.


FREE REGISTRATION OPEN

Schedule coming soon

SAVE THE DATE!


April 27 - May 2022 Riviera Maya, Mexico

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John Tainer, founder and PI of the SIBYLS group (now at MD Anderson Cancer Center) will be one of three chairs at the 5th DNA Repair/Replication Structures and Cancer Conference happening from April 27 - May 1, 2022 in Riviera Maya, Mexico.

The conference will focus on structural and mechanistic insights into dynamic complexes acting in DNA repair and its interface with replication, transcription and other cancer-relevant transactions. This fundamental information will be pivotal for the accurate interpretation of cancer clinical data, design of clinical trials, prognosis, etiology and improving the currently 1/20 low success rate for oncology drug clinical trials. Informative talks and poster sessions along with vibrant discussions will foster productive interactions, collaborations, and insights.

You can find more details and information on how to register at the conference website.

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Using HT-SAXS data collected at SIBYLS, Chris Brosey describes the value and versatility of Small Angle X-ray Scattering. Her article “Evolving SAXS versatility: solution X-ray scattering for macromolecular architecture, functional landscapes, and integrative structural biology” authored with John Tainer is among the top 10 most cited articles from Current Opinion in Structural Biology.

saxs endstation with title.pngSIBYLS is excited to announce we have a biochemist postdoc fellow opening. This is a great opportunity to work with experienced and innovative scientists in the field of structural biology. We are looking for someone who wants to develop and apply biology for multi-component biological macromolecules. You will be a part of a team that designs, develops, and applies synchrotron methods to characterize macromolecules and the assemblies they form. On top of all that, you will get an amazing, ever-changing view of the Bay, San Francisco skyline, and both the Golden Gate bridge and Bay bridges! For more information and to apply go here.

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The XRCC1-DNA ligase IIIα complex (XL) is critical for DNA single-strand break repair, a key target for PARP inhibitors in cancer cells deficient in homologous recombination. Here, we combined biophysical approaches to gain insights into the shape and conformational flexibility of the XL as well as XRCC1 and DNA ligase IIIα (LigIIIα) alone. Structurally-guided mutational analyses based on the crystal structure of the human BRCT-BRCT heterodimer identified the network of salt bridges that together with the N-terminal extension of the XRCC1 C-terminal BRCT domain constitute the XL molecular interface. Coupling size exclusion chromatography with small angle X-ray scattering and multiangle light scattering (SEC-SAXS-MALS), we determined that the XL is more compact than either XRCC1 or LigIIIα, both of which form transient homodimers and are highly disordered. The reduced disorder and flexibility allowed us to build models of XL particles visualized by negative stain electron microscopy that predict close spatial organization between the LigIIIα catalytic core and both BRCT domains of XRCC1. Together our results identify an atypical BRCT-BRCT interaction as the stable nucleating core of the XL that links the flexible nick sensing and catalytic domains of LigIIIα to other protein partners of the flexible XRCC1 scaffold.

Read more about it here.

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In the Snell group’s (HWI) recent paper, Dr. Tim Stachowski led a research effort entitled “SAXS studies of X-ray induced disulfide bond damage: Engineering high-resolution insight from a low-resolution technique.” This work combined a protein engineering approach with SAXS to monitor cleavage of a specific bond from exposure to the X-ray beam. X-ray induced disulfide bond breakage is a common phenomenon in X-ray crystallography but there is limited information on how susceptible disulfides are to low X-ray doses and in solution. To detect disulfide bond breakage with a low-resolution technique like SAXS, a protein was coerced to dimerize through a susceptible disulfide bond. During X-ray exposure, breakage of the bond was apparent by monitoring how the protein sample transitioned from a dimer to a monomer using several metrics calculated directly from the SAXS data. These findings are an important step towards understanding if a connection can be made between the detailed crystallographic radiation damage mechanisms and the solution state, which is closer to physiology, as well as understanding how samples can potentially be altered during the course of SAXS experiments.

SIBYLS beamline scientists contribute to the discovery of an ancient form of rubisco, the most abundant enzyme on earth and critical to life as we know it. By analyzing SEC-SAXS data collected at beamline 12.3.1, they were able to capture how the enzyme’s structure changes during different states of activity. Read all about it here.

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